Model reconstituted system
Mathematical model for the reconstituted system with PGK, GAPDH, TPI and FBPAase.
SEEK ID: http://localhost:3000/assays/2
Modelling analysis
Projects: Default Project
Investigation: Central Carbon Metabolism of Sulfolobus solfataricus
Study: Carbon loss at high T
Assay position:
Biological problem addressed: Model Analysis Type
Organisms: No organisms
Data:
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Creators and SubmitterViews: 10
Created: 8th May 2026 at 15:58
Last updated: 8th May 2026 at 15:58
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Projects: Default Project
Institutions: Default Institution
This is a test programme for the SEEK sandbox.
Projects: Default Project, openEO - a common, open source interface between Earth Observation data infrastructures and front-end applications, JAEGER, FDIUSER1, FDIUSER2
Web page: http://www.seek4science.org
A description for the default project
Programme: Default Programme
Public web page: https://www.seek4science.org
An investigation in the CCM of S. solfataricus with a focus on the unique temperature adaptations and regulation; using a combined modelling and experimental approach.
Submitter: Guest User
Studies: Carbon loss at high T
Assays: Assay stream, Model reconstituted system, Reconstituted system reference state
The carbon loss at high T description will be here but I am currently not imaginative enough.
Submitter: Guest User
Investigation: Central Carbon Metabolism of Sulfolobus solfata...
Assays: Assay stream, Model reconstituted system, Reconstituted system reference state
Experimental data for the reconstituted system are plotted together with the model prediction.
The purified enzymes, PGK, GAPDH, TPI and FBPAase were incubated at 70 C en conversion of 3PG to F6P was followed.
The PGK, GAPDH, TPI and FBPAase were modelled together using the individual rate equations. Closed system.
Creator: Guest User
Submitter: Guest User
Model type: Ordinary differential equations (ODE)
Model format: SBML
Environment: JWS Online
Standard operating procedure for reconstituting the gluconeogenic enzyme system from Sulfolobus solfataricus to study metabolic pathway efficiency at high temperatures.
Creator: Guest User
Submitter: Guest User
Abstract (Expand)
Authors: T. Kouril, D. Esser, J. Kort, H. V. Westerhoff, B. Siebers, J. Snoep
Date Published: 8th May 2026
Publication Type: Journal Article
